Administrators can login using two-factor authentication with FreeOTP or Google Authenticator. From there they can manage their public SSH keys or connect to their systems through a web-shell. Commands can be shared across shells to make patching easier and eliminate redundant command execution.
KeyBox layers TLS/SSL on top of SSH and acts as a bastion host for administration. Protocols are stacked (TLS/SSL + SSH) so infrastructure cannot be exposed through tunneling / port forwarding. More details can be found in the following whitepaper: The Security Implications of SSH. Also, SSH key management is enabled by default to prevent unmanaged public keys and enforce best practices.